rs50521546 SNP Detail

Summary

• ID
  rs50521546
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14372040 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC TGAAGATCCA GGTTTAAAAC
  C
  TGAATCCAGA TTTGGTTTAC AAAGT                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss138986207	ENSMUSSNP3117400	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50521546					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14372040 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6156	CpG island 6156	151 bp distal
Pxk	PX domain containing serine/threonine kinase	478 bp upstream
Rr487874	regulatory region 487874	1669 bp distal
Rr487875	regulatory region 487875	72 bp distal
Rr487876	regulatory region 487876	1452 bp proximal
Rr487877	regulatory region 487877	1895 bp proximal
Tssr4245	transcription start site region 4245	1866 bp downstream
Tssr124234	transcription start site region 124234	1916 bp downstream
Tssr124235	transcription start site region 124235	463 bp upstream