rs50520187 SNP Detail

Summary

• ID
  rs50520187
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:98285690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      A AAGTGTCTGT GTTTTCTTAT GTTGAATTCA CTTTTAAAAC
  CTTGAATTTT TGAGACAGTC CAGTGTTTCC CAGTTCTTAC AGGGGGCTTA ATAATTATTC
  R
  TAGGTCAAAC ACCCAAGCAG CCTGAACTTG CTTGCTTTGT TAAAGTTTTA ACAACTTTGC
  ATTAGTTTAA GGGAAGTCAC CAAAAGGGGT TAGTTCCTTG A                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147088172	ENSMUSSNP2084511	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs50520187					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:98285690 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14470	CpG island 14470			1017 bp distal
Patj	PATJ, crumbs cell polarity complex component			Intron
				Noncoding-Transcript-Variant
Rr376896	regulatory region 376896			298 bp downstream
Rr595734	regulatory region 595734			1551 bp distal
Rr595735	regulatory region 595735			776 bp distal
Tssr37875	transcription start site region 37875			1657 bp downstream
Tssr37876	transcription start site region 37876			1565 bp downstream
Tssr37877	transcription start site region 37877			1545 bp downstream
Tssr37878	transcription start site region 37878			1045 bp downstream