rs50519897 SNP Detail

Summary

• ID
  rs50519897
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGAGGCCCG GCCCAGACTC CAGAGTCGTT GTTCAAGGAA
  GATGATGTAC TGTATGGACC AGTGAGTAAG CATAAGGCTG CAGAGCCGGA GCCACAGGCC
  R
  GAGTCCCACA ACACTGCTTT CCTATCTTCA ATGAAGAGAG AACCGGGAAA CCACACACAG
  ATGCTTCTTC AAGCCCTTTG AAGATCCCTT TGCAAAGGA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355978259	MGP_WTSI_2_144097992	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	G	A	A	G	G	A	A	G	A	G	A	A	A	G	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50519897					SNP	G	G	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	G	G	G	G	A	A	G	G	A	A	G	A	G	A	A	A	G	G	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355978259	MGP_WTSI_2_144097992	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114176 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	891 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Coding-NonSynonymous
Rr373996	regulatory region 373996	1869 bp upstream
Rr397362	regulatory region 397362	1204 bp downstream
Rr397363	regulatory region 397363	539 bp downstream
Rr566425	regulatory region 566425	1695 bp distal
Rr566426	regulatory region 566426	1305 bp distal
Rr566427	regulatory region 566427	608 bp distal
Snx5	sorting nexin 5	1463 bp upstream
Tssr20524	transcription start site region 20524	1665 bp downstream
Tssr20525	transcription start site region 20525	1584 bp downstream
Tssr20526	transcription start site region 20526	1307 bp downstream
Tssr20527	transcription start site region 20527	1201 bp downstream
Tssr20528	transcription start site region 20528	623 bp downstream
Tssr26595	transcription start site region 26595	1770 bp upstream
Tssr26596	transcription start site region 26596	1723 bp upstream
Tssr26597	transcription start site region 26597	1456 bp upstream
Tssr26598	transcription start site region 26598	1409 bp upstream
Tssr26599	transcription start site region 26599	1393 bp upstream