rs50518709 SNP Detail

Summary

• ID
  rs50518709
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121517531 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGCCCCGA GACCTCGCCT
  CCAGCCCTTG GACATGGCGA TCCTCGTGCG CCCGCGCCTC CTAGCGGCTC TCGCGCCCAC
  GTTTCTCGGC TGCCTCCTCC TCCAGGTGAC CGCGGGTGCA GGTGAGTGGC ATTGGTCCTG
  AGAAGCCGGG GGCGCTCCGC CCGCGGGAAA CAGAGAACCT ATCTGGCTAG CTGGGGGGGG
  R
  GGGGGGGTGC TGCTCTGGTT CCTTGGGGAC ACCAAGGTGT CCGGCTGTAC CTGTGGATTT
  GGCTGCGCTC GCCCTGAGGA TTTGAATGAA CAATGGGATG GAAGGTAGTT GGTGCCCGGA
  CTCCTGGCAG TTGTCACTGC TAAAGATGCC TGCTTTGTGC GTCCACCGCG GTTGCATAAG
  ATAAAACTGA GATTCCAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss135727521	ENSMUSSNP2076958	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50518709					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121517531 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13760	CpG island 13760			within coordinates
F3	coagulation factor III, tissue factor			Intron
				Noncoding-Transcript-Variant
Gm43823	predicted gene 43823			444 bp upstream
Gm64338	predicted gene, 64338			within coordinates
Rr584148	regulatory region 584148			1963 bp distal
Rr584149	regulatory region 584149			379 bp distal
Rr584150	regulatory region 584150			1137 bp distal
Rr584151	regulatory region 584151			335 bp distal
Rr584152	regulatory region 584152			163 bp distal
Rr584153	regulatory region 584153			within coordinates
Rr584154	regulatory region 584154			129 bp distal
Tssr31453	transcription start site region 31453			348 bp downstream
Tssr31454	transcription start site region 31454			321 bp downstream
Tssr31455	transcription start site region 31455			297 bp downstream
Tssr31456	transcription start site region 31456			264 bp downstream
Tssr31457	transcription start site region 31457			929 bp upstream
Tssr35426	transcription start site region 35426			473 bp upstream