rs50512129 SNP Detail

Summary

• ID
  rs50512129
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:121933940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAAAACTGAA TGTCCCATCT CTGTAATAGA CACCTCTCCT
  GTACAAAAAA GTGCATGCAC ATGCTTATAC ACATATGTAC ACATAGATAT ACATGTGTTC
  R
  CATCCACTCA CCCTCGTTTA GCACCTTCCC TCTTAGCCAG GAGTAAGAGC AGAAGGAAAG
  AGCTAGTCCA GAGGAGGTGA AGGAAAAGTG AGAGAGGCA                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss135735619	ENSMUSSNP2810423	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss320908765	CHEV_3_121843209	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs50512129					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:121933940 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Abca4	ATP-binding cassette, sub-family A member 4			Intron
				Noncoding-Transcript-Variant
Gm43158	predicted gene 43158			within coordinates
Rr584243	regulatory region 584243			470 bp proximal
Rr584244	regulatory region 584244			728 bp proximal
Rr584245	regulatory region 584245			1836 bp proximal