rs50511343 SNP Detail

Summary

• ID
  rs50511343
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr11:102754589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTGTGCAT TAGATAGTTG
  TGCTCAGTGA ATGGGCCTAG AAGTGAAGGA TCACAGCAGC AATGAGCACC CCCAGATCTT
  TGTTTCTAAA TAGTGGTCTC CCCTATATAG GAAGCCAGAA CTCATTGAAG AAATGGCTGG
  TGTTAGGACC AGAGCAGGGA AAGTGGAAAA AAACAAGCAA GTACTAAAAC CCGAGCTATG
  W
  CAAAGGGTGA AAGAGTCAGC CACAGGAACC TGAGAGCCCA GATGGGTCAG CCAGAGTCTC
  AGGTATGAGG ATATGCTGGG TGGAGAGGTG CACATCTTCA ATCCCAGCAC TCAGAAGGCA
  GACCTGGGCT AGACAGTAAG TTCTAGGCCA ACCTGAGCCA CACAGCGAGA TTTCTTTTTA
  ATTTTTTTTT CTTTTTTCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss132739414	ENSMUSSNP6962332	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
ss323834864	CHEV_11_102725077	CHEVERUD	SCREENING_POP	f	SNP			A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50511343					SNP	A	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:102754589 () rs orientation: forward

Symbol	Name	Function Class
Eftud2	elongation factor Tu GTP binding domain containing 2	Intron
Gm74253	predicted gene, 74253	1760 bp upstream
Rr457439	regulatory region 457439	559 bp proximal
Rr457440	regulatory region 457440	709 bp proximal
Tssr111106	transcription start site region 111106	1070 bp upstream