rs50508701 SNP Detail

Summary

• ID
  rs50508701
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:81846513 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGAAATTAG GGAATGGCAG
  AACATTTTGT TCTTTTGCAA GACATCAGCC ATGATAAGTA GACTGTTCCT GGCAGAGTGC
  TAGAGGGCTG TGAAAGGCAG GAGTGATTGC AGGGGTGATA ACACTGACAC TTGGCAGCCT
  GCAACCAGTG TCTGGTTTAG CAAGTGAAAG AGACCATCAT TCACAGGAGC CATACATGGG
  Y
  GGCTGCTGCA GGGGCCACTG TGAGATCCAT ATCTTAGAGA AGGTCTGGCA ATCATCTTCT
  AATCGTTTAC AATTAGGTCT ACAAGTATTT AAAATACTCT TGCTCTAACT ACTTGGCAAC
  CAAATAGATT GATCGTTACA AATCCCAAGC ATGCTGTAGA TCCCAGACAA CATACACCGT
  CTTACGGAAG AACTCCATGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss135398846	ENSMUSSNP4777729	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs50508701					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81846513 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ctso	cathepsin O			Intron
				Noncoding-Transcript-Variant
Rr578733	regulatory region 578733			within coordinates