rs50506464 SNP Detail

Summary

• ID
  rs50506464
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89315174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTA GTGTCAGCCT CCCCTAAGCC
  Y
  CCAACGGCCC CTGTGAGCTG AGCTT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133371782	ENSMUSSNP6426451	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C
ss321851932	CHEV_6_89288186	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50506464					SNP	C	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89315174 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	Intron
Rr634106	regulatory region 634106	250 bp distal
Rr634107	regulatory region 634107	599 bp proximal
Rr634108	regulatory region 634108	1248 bp proximal