rs50503945 SNP Detail

Summary

• ID
  rs50503945
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:66986718 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTTCCG TGCGATTGGA
  TTGGGGCAGG CACTGTGGTC CACTCACCAG AGGTCTTAGG GTCCCGTGGG GAGTCCCGTG
  TGGGCCCTTG CGGGTGTTGG GCAAGACTCT CCAAATCTCC CTTTCTTATA AGCCCACTGT
  CTTATGACAG TAAGGGCCTA CTCACGTGAC CTCATTTTAA CTCAGTTACC TCTTCAGATA
  Y
  AGTCCTACTC TGGCGTGTAT GAAGTTGGGG TGGGGAACAC AATCCCTCCC GTGAATGTTG
  GGACATATTG TTTATTGCTC CCTGGTCCTA CAGATCAGTG ACATATGCCA GGAAGAGGGC
  AGACCTCTGC CAAGTACCTG GAACTATAGT AGGAACTAAA GAGTATGGTG CACACCACGC
  AGATAAGCGT ACAAATGCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60892269	NES15964145	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	C	C	C	T	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50503945					SNP	T	T	T	T	T	C	T	T	C	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60892269	NES15964145	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:66986718 () rs orientation: forward

Symbol	Name	Function Class
Gm36816	predicted gene, 36816	747 bp upstream
Gng12	guanine nucleotide binding protein (G protein), gamma 12	Intron
Rr379521	regulatory region 379521	within coordinates
Rr631571	regulatory region 631571	1089 bp distal
Rr631572	regulatory region 631572	588 bp distal
Rr631573	regulatory region 631573	95 bp distal