rs50502420 SNP Detail

Summary

• ID
  rs50502420
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr13:19529914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATATTTTTT TTGTCATTGG
  TGAATGCAAC CACTTGGGTA GACAATTGCT ATGTCAGCTG TATGCCAGAC CGAGTGAGAT
  GAGTGAGATG TGAATAGTTT AGGATGAGAA TAGTTTAGGG TCCCTGTGAC TGCAGAGGAG
  AGCCTGTATT CTGCTCCTCG TCATTTAACA TCATGCATCA TTCAGGTACC CTTTTCTAGG
  Y
  ACTTTCACAC AGCTAAGCAG AGGGATGTGT GGGCAAAGAC TGGTGATGGG CCACTAGCTA
  GATCACCATG TGGGTATGTT GTCATCCTGT TTTGAAAGCA TTCCTAAGGC CCCAGATTGA
  CAGAGAAAAA CAATTCATAT TCTCCCATGT GGTTAACAAG TCCTTTCAAT CTAGTGGAGA
  AGCATACAAA TGACACAACT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52626578	NES15515305	PERLEGEN	MM_PANEL2	f	SNP	T	T	C	T	C	T	C	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50502420					SNP	T	T	C	T	C	T	C	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52626578	NES15515305	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:19529914 () rs orientation: forward

Symbol	Name	Function Class
Tcrg	T cell receptor gamma chain	within coordinates
Trgc4	T cell receptor gamma, constant 4	Intron
Tssr118551	transcription start site region 118551	1511 bp downstream
Tssr118552	transcription start site region 118552	212 bp upstream
Tssr118553	transcription start site region 118553	1342 bp upstream
Tssr118554	transcription start site region 118554	1794 bp upstream
Tssr121590	transcription start site region 121590	1396 bp upstream
Tssr121591	transcription start site region 121591	513 bp upstream
Tssr121592	transcription start site region 121592	25 bp downstream