rs50501201 SNP Detail

Summary

• ID
  rs50501201
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:8638930 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGAAAC AGGACATAGG
  CTAAACAAGA CAGAGCTGAA AAATGGAAGA AAGAAGTCTC CATGACGTGT CCCTTCCCGT
  GGCTCACCTC ACTGAGTTAA CCCACCGTGC GGTTTGCCCT AATCACAGCG CGCTGCCTCT
  TCCACCGTGA GGGCCTTCCT TATCCATCTC TTTAGAGGCG GATACAGATA CACAACACAC
  R
  TAAAACACCT GGCAGCCAGA GCTCACCGTG AGTGCCAATC TCTGTCTCCT TAAAATAGCA
  GAAGGACTTT TGGGAGGAGG TCTAGGGCTT ACTTAAACGG GGGTAACATT TGAGACCCAA
  AGCTCACAAA AGGAAGGTCC TGCTTTGCCC AGAGTCTCCA GTTTAGTTGG CAGCCTGGCA
  GCCGGTCTTC CCCATTTTCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss146766639	ENSMUSSNP2705822	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss323245278	CHEV_10_8482964	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50501201					SNP	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:8638930 () rs orientation: forward

Symbol	Name	Function Class
Rr384117	regulatory region 384117	147 bp downstream
Rr427375	regulatory region 427375	1716 bp distal
Rr427376	regulatory region 427376	within coordinates
Rr427377	regulatory region 427377	338 bp proximal
Sash1	SAM and SH3 domain containing 1	Intron
Tssr3133	transcription start site region 3133	770 bp upstream
Tssr96640	transcription start site region 96640	907 bp upstream
Tssr96641	transcription start site region 96641	883 bp upstream
Tssr96642	transcription start site region 96642	852 bp upstream
Tssr96643	transcription start site region 96643	796 bp upstream
Tssr96644	transcription start site region 96644	700 bp upstream
Tssr96645	transcription start site region 96645	550 bp upstream