rs50498311 SNP Detail

Summary

• ID
  rs50498311
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:50580417 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGCTTAC AGCAGTTGGC
  CTGCTCCTTT GCCACCCCCT ACTCCTCCCG ATTCCCCCAT CTGGCTTCAC CCCACCACCC
  ACCCTGTGCT CCTGCTAAGA CTCCCACTTT GCAACAAACT TAACAGATAG GACATTTACA
  CAGTGTGGGG AGGGCTTGGA GTACAGACAA AAGAAAGAGG GCATGGGGGA ATTTTTTTTT
  T
  CAAGTTCGTC AGATTGCTCA TATCCTTAGA GCAAAAGGAG ATTTGCGATT GTAGCAAAAA
  ACTAACAAAA CAAAACAGCC AAAACAAACA AACAAACAAA CAAACAAACA AAAAACCCAG
  TGCATGCTAA AGTGGTCAGG CACAGGCAAA TTGGTCTTGC TAACCCCCAG TGTTCATCCC
  CAAGTAGCAG TCTTACCTTG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ
ss133182442	ENSMUSSNP2205725	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ
rs50498311					SNP	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:50580417 () rs orientation: forward

Symbol	Name	Function Class
Gm38807	predicted gene, 38807	within coordinates
Rr630049	regulatory region 630049	1464 bp distal
Rr630050	regulatory region 630050	1621 bp distal