rs50487840 SNP Detail

Summary

• ID
  rs50487840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:22034042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CTTTTCTGCA GGGCATCCTG TCAACTGTCT TCCCCCGCAC
  CCCACTCCTC AATAAGGTCC GGGTTTTGCT TGTAGGAAAA TGTTGTTATC TACCACCCCA
  Y
  GGAACCCGCA TAAGTATTGT TGCTTTATTT TATTTTTATC TGTCCTCATC AGACTGACAC
  CCCCGACCCC CCCCTCACCC TGTCAACACC CCAACTCTGG G                    
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss146960115	ENSMUSSNP2894141	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs50487840					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:22034042 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1373	CpG island 1373	256 bp proximal
Cpgi1374	CpG island 1374	1044 bp proximal
Raet1a	retinoic acid early transcript 1, alpha	466 bp upstream
Raet1e	retinoic acid early transcript 1E	399 bp upstream
Rr384270	regulatory region 384270	1190 bp upstream
Rr428833	regulatory region 428833	within coordinates
Rr428834	regulatory region 428834	454 bp proximal
Tssr92677	transcription start site region 92677	252 bp upstream
Tssr92678	transcription start site region 92678	326 bp upstream
Tssr92679	transcription start site region 92679	378 bp upstream
Tssr92680	transcription start site region 92680	423 bp upstream