rs50485186 SNP Detail

Summary

• ID
  rs50485186
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165947456 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCACACCTC CGCATTCATC
  TGCTCCCTAT AGGAGCTGTT TTGGATAACG GTGTCACCTG CACGTTAACA AATACCAACC
  AGAAGATCAG TAGACCCAGG AATTCAGATC CCATCCCTGG CACCTGTCGT TCTAGAAACA
  TCCTGAACTG GGCAGCTTTG ACCTGCTGCC ATTGGGTTTG GGGGCTACGG GTTGGGGGGG
  K
  GGAGGTCCCT GGTCTGAGTG TCAGAGACAA TCCCACTAGG CTGGGGGATC TGGGGATCTG
  AGCCACAAAA GAAGGTGGAC AAAGGACAAA GTCCAGGCTG CTATAGCTAT TACGTGTGAG
  AGGCCACAGG CCTGAAGTCT TCAGGTTTTT GGCAGACAAA CCGTCTGGGC TGAGGAGGCA
  GGGGTGGAAG TATGTTAAAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356472553	MGP_WTSI_2_165931036	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	T	G	G	G	G	T	T	T	T	T	T	G	G	G	G	T	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CBA/J	CE/J	FVB/NJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	PL/J	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs50485186					SNP	G	G	G	G	T	G	G	G	G	T	T	T	T	T	T	G	G	G	G	T	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356472553	MGP_WTSI_2_165931036	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165947456 () rs orientation: forward

Symbol	Name	Function Class
Rr570135	regulatory region 570135	198 bp proximal
Rr570136	regulatory region 570136	1108 bp proximal
Sulf2	sulfatase 2	Intron