rs50482558 SNP Detail

Summary

• ID
  rs50482558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:77037674 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCATAA GGGGAACCCC
  CAGAGCTTCT GCTGTCAATG TCTGTGAGAA AGGATAAGAC TGGACCCTAG CCTCCCTGTT
  AAGTGGAATG CTTATTAAAC CTCACTTTGA AAGGAGGTTC TCTGGTGCTA AAGAACCAAA
  GTAATCCTAT TCCCATGAGA GCAGCAAGCC TCTGCTATGT GATTTCTGAT GCCTGACCTG
  Y
  AGTAGGTGGT AACACACAGG CCAGTCAGTC CTCAATAGCA AGCTGAGTGT GTAGTCGGAG
  GCTCACTACC CCAATCTAAT CTCAGCGGGA GACTCAATTC CTCTCATTCA CGCCAGCCAA
  GCCTTGCAAC TCTCTTTGTT GAAATGATGT CAGGTAGAAC CTCCAGGATT TGAGAAAGAC
  CAGCAGCTAA GTTGTTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52373201	NES15266651	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50482558					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52373201	NES15266651	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:77037674 () rs orientation: forward

Symbol	Name	Function Class
Gm67806	predicted gene, 67806	637 bp upstream
Rr384958	regulatory region 384958	within coordinates
Rr434428	regulatory region 434428	149 bp proximal
Tssr94215	transcription start site region 94215	337 bp upstream
Tssr94216	transcription start site region 94216	357 bp upstream
Tssr98231	transcription start site region 98231	626 bp upstream