rs50479132 SNP Detail

Summary

• ID
  rs50479132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146555713 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAATGGTAA ATGAGGGGGA
  TGCCAGGCCT TGGCTCAAGC TGGAAAGCAG CTTCTCGCCT AGGGTTGCCA TTTTTAACTA
  GTGGTTTCTT TGTCTCTATG ATGGATGGGT TGTAATATTT ACCCCAGATA TACTAATCAT
  TTACTAAGTA CTAGCTCAAG GCAGACCAGG AAAACCTACA CGATTCACAT CTTCAACCGA
  R
  TATTTGGGAT GGTGCAAACG CAGGCCTCAT CTGACATATA TCAGAGGCGG AGTGAATATG
  CTCTGATAAG CCTTCCGCAT TGAGCAGCTT ACCACGATTT AATTTTGTCA AAGGCATCAA
  GCGCTGTTTT CACCTTTCTT AGCATCATTT CAAGGCAACA TTTTAAAAGA TTCTCAGATC
  ATGCTTGTTT GTGAATACAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61097613	NES16606907	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	G	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50479132					SNP	A	A	A	A	G	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61097613	NES16606907	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146555713 () rs orientation: forward

Symbol	Name	Function Class
Gm65628	predicted gene, 65628	1447 bp downstream
Rr587096	regulatory region 587096	1919 bp proximal