rs50477221 SNP Detail

Summary

• ID
  rs50477221
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:92197174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTCTTGAT TCCTCTGCTC
  CTTGGTTCCT ATGCCCAATC CATCAGCAGG TCCCTCCCGC CACCCTACTT TGAGTAGATC
  TGAATAATGT CCACTCTCAC AGCACTGCAG CCACCCTGCC ATCTCTCATG GGACCACTGC
  AGCAGCCTCC CTCCTGCCCT TCCTTTCTGA CCTCTCCCTG TGCCAACTCA GTCAGACATA
  Y
  CCCTCCTCTG TTCAGCAGCC CCAGAGGATC TGACAGGCTC AGGAGAAATG ACCTTTTTCA
  GTATTAGGAT GCTCTTGCAG GCTTAGGACC CTGGCTTGAC CAAATGACTT CTTTCCCACT
  CTTTCTCGGC GGTTCCGGCA GATAGACTCG GGCTTATTCA CAAAAAGGCA GCAGGCAGAA
  GCAGATGAGG TCCCTTAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60911642	NES16220137	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50477221					SNP	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60911642	NES16220137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:92197174 () rs orientation: forward

Symbol	Name	Function Class
Rr634622	regulatory region 634622	304 bp distal
Rr634623	regulatory region 634623	531 bp distal
Rr634624	regulatory region 634624	307 bp distal
Rr634625	regulatory region 634625	1459 bp proximal