rs50476391 SNP Detail

Summary

• ID
  rs50476391
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:138670928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCATGTGAAT TTATTGATTT GTTATTAAAT AAATAATATT
  TCAGAGAGCT CTATTTGTTC TTTGTGATGT GTCCTTCCCC ACCCCCACCC CCACCCCACC
  C
  CCTTTAGAGC ATACAGAACT AAGGTCTTCG AGCATAAGAA CTTAGCAATC TGCTAAGGGC
  AATGTTCTAG TCAGCTTTTT TGCTGCTAAA ATAAAACAC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J
ss147660986	ENSMUSSNP6640902	ENSEMBL	ENSEMBL_Sanger	f	SNP	C
SNP Consensus Information
SNP					Consensus Type	DBA/2J
rs50476391					SNP	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138670928 () rs orientation: forward

Symbol	Name	Function Class
Rr398631	regulatory region 398631	131 bp upstream
Rr603051	regulatory region 603051	1797 bp distal
Rr603052	regulatory region 603052	1229 bp distal
Rr603053	regulatory region 603053	within coordinates
Rr603054	regulatory region 603054	291 bp proximal