rs50471652 SNP Detail

Summary

• ID
  rs50471652
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30173227 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGGAAACT AAGTTATGAA
  GCATGGAATA CTTTGATAGA ATTATGAAGT GACAGGAGAA GCTCAAATAA TCTGGTCTTA
  ATTCATTATG ACAGCACAGA TTTTATTAGT CAAGTTCATT ATAATCATCC AATGTTTGCA
  TCAAAATTTT GCACTGTTAT GACAACCATT TGAAAGTACT GACTCCTGTA TTGTGGCTTC
  R
  ACATGATAAA TTCCCACTTC CAGAAGACAT CCAGCTGGTA AGACCACTTC AGCTGCCAAA
  AGGATGCTTC ATAATTCCCA CATCTGGAAT CGGTCCTCTG TCACAGCCTC ATCACTAATT
  TTAACCCACG TTTTTAAAAA AATCAGTCTT ATTTTTTTCC CCTAAAGTAA GACTGAAACT
  TTTACCCGAA GGGATTTGTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss134729172	ENSMUSSNP2169000	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs50471652					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30173227 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574719	regulatory region 574719			within coordinates