rs50471396 SNP Detail

Summary

• ID
  rs50471396
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:83974992 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAGAGGGC CCGGTGTGAC
  CATAACCTGG AGGCTGCCTC CAACCTCCTC TGCAAGTTCA TGAATTCAAA TATACCTGTT
  CACTGATCCA ACAACTTAAA ACACAACACA AATACATAGG TTTTGAGTTT TAAAAATACT
  TTTTTTTTTT AAGATAGAGT CTCACACTAT TGATCGGGTT GACCTTGAAC TCACAGAAAT
  M
  ACCTGAGAGC TTTGATAAGG TACGAACCAG CACACAGAGA CATAAACTTT TAATTAATTC
  TTTGACAATT TCATACAATA TATTTGAATC CTATTCATTC TTCCAACTCC TCTCAGATTC
  TCCCCCACCC AGCCCTACCT ACCCAACCTC CTTGTATCCT CCTTTAAAAA CAAAAAACAA
  AAAAAACCTC ATCAACTCCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss135420238	ENSMUSSNP4422351	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss320822184	CHEV_3_83871607	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs50471396					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:83974992 () rs orientation: forward

Symbol	Name	Function Class
Gm56775	predicted gene, 56775	within coordinates
Rr397735	regulatory region 397735	1492 bp upstream
Rr578973	regulatory region 578973	1403 bp distal
Rr578974	regulatory region 578974	1470 bp proximal
Rr578975	regulatory region 578975	1756 bp proximal