rs50470498 SNP Detail

Summary

• ID
  rs50470498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31937341 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATACTACG CATGTTCTCT
  TCGCCAGACA CAGTTCTGAA CACCCAGCAC ACAGGACAAA AGAAGCCCTC TTCCATGCTT
  GAGCAGTGAG GTCAGAGAGA TTCTTGGAGT GGCAGGGTGA GCAGCGTTCC CTAAATGAGG
  ATTCCTAAAT GAACTGAGTG CATGTGGTCA TAGGAGCAAA GCAGGGAACA CAGGAGCGAG
  R
  CATTAAAAGT GCCATCAAGT TTGAGGGGAG TGGCCTGCAC AGTCATGCTC ACTGTAGAGA
  CTCAGGATAA ACAAGAGATG GAAACAGCAA GTGCCCATGA TTTTGTAAAT GGACAAGAAA
  ACATGGAATC CACACGCACC TAATATGTAG GTATGGTTTA ATAGTATTTA CCCATAAAAT
  GAATGTTGGT TAATTACAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60384305	NES15886335	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50470498					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60384305	NES15886335	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31937341 () rs orientation: forward

Symbol	Name	Function Class
Rr574924	regulatory region 574924	153 bp distal