rs50468096 SNP Detail

Summary

• ID
  rs50468096
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647618 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTGTGAAT TGAGGTTTTG
  TACAGGTCGA AAGCTTAGTT CTGTTACAAG CACTGGAACT CCGTGCAGTG TTACCAGAAG
  CATGTGTTGA GGATGCTGTC CTTTTTCTTA CTGCGTGTTT TTGACACCTC TGTTAAAGAT
  TAGGCTGCTG TAGCGAGGCA GCTGGTGGAT ACAGACTGCT ATTCTCAACG GGGTTCTTTT
  S
  CATTCCTGCC TCTTTTGTGA TTGAAACGAA GTAGGTTTGA AATCCAATCC AGGCAAAGAC
  TGTGTGCTAG CTACAGCTCT AAGAAGTATT CCCTGTCAGT GTTCTAGAAG GCATCAGGGT
  TGTCCCCAGC AGAGAATTAG AGGATTACCA TGCGATGACC TCCAGAGCAG CATGTCTCTG
  AAGTGTTCTG TATGGACTTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135873152	ENSMUSSNP2215499	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
ss320957516	CHEV_3_127556887	CHEVERUD	SCREENING_POP	f	SNP			G	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50468096					SNP	C	G	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647618 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1959 bp distal
Rr584884	regulatory region 584884	670 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	436 bp distal