rs50465740 SNP Detail

Summary

• ID
  rs50465740
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647440 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAAGGC TTCTTGGTGT
  ATTAAAAGGT TGCATACGAG GAACGGCAGT ACGGCTGAGG CTATGGATGG TGGCCATTAC
  ACCAGGAAAG CCTTGGGCTA GAGGAGCACC AGAGAGGCAG GACACTTGAC CTGGCTGCGC
  AGGGCCCAGA GCTGCAGGTC TAATTAAGGC CTTTGATACA TTGTGAATTG AGGTTTTGTA
  Y
  AGGTCGAAAG CTTAGTTCTG TTACAAGCAC TGGAACTCCG TGCAGTGTTA CCAGAAGCAT
  GTGTTGAGGA TGCTGTCCTT TTTCTTACTG CGTGTTTTTG ACACCTCTGT TAAAGATTAG
  GCTGCTGTAG CGAGGCAGCT GGTGGATACA GACTGCTATT CTCAACGGGG TTCTTTTGCA
  TTCCTGCCTC TTTTGTGATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873137	ENSMUSSNP6308198	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
ss320957512	CHEV_3_127556709	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50465740					SNP	T	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647440 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1781 bp distal
Rr584884	regulatory region 584884	492 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	258 bp distal