rs50465538 SNP Detail

Summary

• ID
  rs50465538
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:130907823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCGTGCACCT CCACACCCAA TTTGTTCTGT TTTGTAAGAA
  ATGAGGTTTT ATTGTGTTGC TCAGGCTGAT CTCAGTCTCC TGGCCTCAAG GTATCCTCCC
  W
  TGTCGATACA CAGCACAAGG CGTAGGAAAA GTGGCAGATT TTTTTAAATT AAGTTTTCTT
  TCCAAAATAT AGATTCAGAA ATGTGAGATT TTCACAAAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147598219	ENSMUSSNP4725152	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50465538					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:130907823 () rs orientation: forward

Symbol	Name	Function Class
Rr565175	regulatory region 565175	1936 bp distal
Rr565176	regulatory region 565176	1717 bp proximal
Tssr26336	transcription start site region 26336	1383 bp downstream