rs50464760 SNP Detail

Summary

• ID
  rs50464760
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152099361 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGCTGGAGGA ACCTAAGTTT
  GTGGGCTGTA GAACAAGACC GTCCCAAAAC AACAGCTAAC TATAAATAAA ACTTATCAAC
  TGTGCATTTA AAAATGGTGA TTTTCTAACT CTAGCACCCT CACTCATCCT GATGTCGGAT
  GTTACACATG CTGAACACTA TCTTACTTTA GTTTGGATAT GAAATATATC CTGTGTCGAA
  R
  CACCACCACC TGGGGGTGTT GTGAGGTGGC TGCACCTGAG GATGTCAGCC TCATCCACAG
  GCTGCATCTT GTCCCTGACC TGCGTATCTT TGTGCCTCCT AGTTGCTCCC TGAGGCTGAA
  CAGCTTTTTT CTGCCATCAT GTTCTGCCTT GTTACAGGTC TAAAAGCAAT GGAGTCAGTT
  GACCATGGGC TAAAACTTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss136102872	ENSMUSSNP4375778	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
ss321028812	CHEV_3_152056688	CHEVERUD	SCREENING_POP	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs50464760					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152099361 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	843 bp proximal
Cpgi13950	CpG island 13950	1571 bp proximal
Gm43857	predicted gene 43857	within coordinates
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	2 bp proximal
Rr587541	regulatory region 587541	89 bp proximal
Rr587542	regulatory region 587542	943 bp proximal
Rr587543	regulatory region 587543	1789 bp proximal
Tssr32410	transcription start site region 32410	1720 bp upstream
Usp33	ubiquitin specific peptidase 33	107 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	1749 bp upstream