rs50460215 SNP Detail

Summary

• ID
  rs50460215
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107600745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACATGACT AACCCCTGAG
  TGGTCCAGGA ACTTGTCAAG CCAGAGCCTT GCAAAGGCTA ACGTTCCATT CTGAAGGTCT
  CTGCTGTTTC CACAACCACA TTAACCCTGC AAGTCCAGAG CCCATTTCCT GCCCAAAAGA
  ACCAGCTAGT TCTTCAGTGA GCTCCACCAT CATGTTACTA ACCCATACCA CCAGTGTGGT
  R
  TGTGCAGGGC TCTCTCAGAG AATTCTCTGG TTGTTAGTTC TCCCAAGTCT CCCAGTGAGG
  ATATGGAGGC TAGAGGGTAG GAGATATTAA GTGATGGATT CAGGGTCTGA ACTGTGATGC
  TGTGCTGACT GCCCTGTGAC TCCCCAGTGC TTGCAGACCC AGTGGGAGAC ACAGGCTGTT
  CTGTGCCTTC TGGGGGTGCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147182603	ENSMUSSNP2234952	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G		A
ss321250715	CHEV_4_107416153	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs50460215					SNP	G	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107600745 () rs orientation: forward

Symbol	Name	Function Class
1700047F07Rik	RIKEN cDNA 1700047F07 gene	within coordinates
Rr597058	regulatory region 597058	1560 bp proximal