rs50459592 SNP Detail

Summary

• ID
  rs50459592
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5155885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCTGAAGC ATCCTTATTG
  TGTTGGCTTA AAGGTAAATG ACTGACGTCA GTGATGTGGG GGATGGGATT GAGTTAATCT
  AGTGACTCAA AAGTTGTCAG CATTCCTCTA CACAAGGTTA ATGTGAGAAA AATTAGAACT
  ACTCCAACAA ATATTATAAC TCTGCTGTTT ATTGTAACTT CATCATCATA AAAAAAGCCC
  Y
  GTATCAGTAT TGTCGTCTCT AAAGGTCAAC TTTGAAGTCT GTGTGTGTGT ATGTGTGTGT
  GTGTGTGTGT GTGACTGTCT ATGAACACTC CACACAGAGC TCATGAGTTT TCATTTAAAA
  CCCAGTAAGT AATAGTAAGA TGTTTTGATA TACAGAGTTT TGAAAATAAT TTGATGCAGC
  ATTTCCCTAT AAAGGAAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366974	NES15869428	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50459592					SNP	C	C	C	C	C	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366974	NES15869428	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5155885 () rs orientation: forward

Symbol	Name	Function Class
Gm17308	predicted gene, 17308	within coordinates
Rr573165	regulatory region 573165	1597 bp distal
Rr573166	regulatory region 573166	873 bp distal
Rr573167	regulatory region 573167	539 bp distal
Rr573168	regulatory region 573168	255 bp distal
Tssr28264	transcription start site region 28264	510 bp downstream