rs50458554 SNP Detail

Summary

• ID
  rs50458554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57353539 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATGGCTT TTTTTTTCCC
  CCTCCTCCAG GCATCTAAAG AGACTGGCAG CATGCCTGCC CTGGGGTTTT ATTTTAAACT
  CTAATAAATT ATTTTCTTGA GCTTCCATTT GAGTCCACTA TTAATTTACT AAGAACCTCT
  GGAAGGGACC TTGATTTTTC TGGTATCATC TGGTGACTAC AAGGCAGCCC CCAGGATTCT
  Y
  GTAACACACA CCATAGCAAT TCTAAAATGC TTATGTGTGT ATATAAATAC ACACATACTT
  GTTGCAGTGA CTTCACTTGC AACAACTTAA TTATGAAGAT CAGTTAAGCA GTCAGATTGC
  TGTCTTCATG TCTGATGGTG GGGCAGGAGG TCCTCACTGT AGGCTGTCAG TAAGGCAGTC
  AGATATGGAT GTAAAAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135201353	ENSMUSSNP1752636	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50458554					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57353539 () rs orientation: forward

Symbol	Name	Function Class
Rr577097	regulatory region 577097	within coordinates
Rr577098	regulatory region 577098	1758 bp proximal
Rr577099	regulatory region 577099	1958 bp proximal