rs50457878 SNP Detail

Summary

• ID
  rs50457878
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:148217331 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAGACAACG CAGTGAACAA GGTTGTGCGG GTCCAGGTAA
  CAGAGCCTTG AGAGGCCCCA CAGATTCTTG GCCCAATAGA GAGACAAATA ACAAATATCT
  C
  GTTTTCAGTC TTCAGTTTTA AGTTATCTGG AGTTAAGGCA AGTTCTTTCA CCAGCAACAG
  ACAACTTTGA GAAGGTACCC TTCATGGGTC CTTGCCCAC                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147923781	ENSMUSSNP6854730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50457878					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:148217331 () rs orientation: forward

Symbol	Name	Function Class
Gm39957	predicted gene, 39957	919 bp downstream
Rr566886	regulatory region 566886	1169 bp distal
Rr566887	regulatory region 566887	14 bp proximal
Rr566888	regulatory region 566888	99 bp proximal
Rr566889	regulatory region 566889	480 bp proximal