rs50456782 SNP Detail

Summary

• ID
  rs50456782
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134906057 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGGCTCCC TGGAGCTGGT
  GGTTGCCAAG CTGAGACCAT AGCCTGAAAA TTGGGGCTGT GGATAATGGT GTGGGGACCT
  AGCTTGATAA TCCCCCTCTA CTCAGATAAT CCCCCCACCC CAAGCCTGTG CCCCTGACCA
  GATGGGACAT ACAGATTTTC CTAAGATAGA TGTGGTTCTG TGGTACCCAT TTCAGAGTTC
  Y
  AAGATCTTTC CCTTTTGTAG GACCAGCCTA AGATCAACCG CCAACAAGAA GTTCCTGTTT
  TCCCAGCCTA GACCCTGGAC CCTTTCCTAC CCAGTAGCGC CACAGGATTC TAACCACAAC
  TAATGCAAGA CCTGTCCCCA GGTACACCCA GGGTGGGTCA CCCAGCAGGA CCCCTCCCTG
  GGTTGGAACA GGAAACTGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss147540827	ENSMUSSNP4332849	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
ss321351083	CHEV_4_134734661	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50456782					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134906057 () rs orientation: forward

Symbol	Name	Function Class
Rr601942	regulatory region 601942	183 bp proximal
Rr601943	regulatory region 601943	390 bp proximal
Runx3	runt related transcription factor 3	756 bp downstream