rs50456288 SNP Detail

Summary

• ID
  rs50456288
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:8104206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAGGATTC ATGGAAAATC
  TTGAATAAGC TGTGCTAATC ACATGATCTA TCTGTCTTAC CCTGATCTTA TATCTATAAA
  GTCTTAATAC TCTGTGCCTT TTAGGGAAAA GAAGCCACAA GAATCAATCA GAAGTGATAT
  TAGGTTAATA AATTTATTAG AGCCAAGGGT AAAAGAAAAG AATGTTTCCT AAGAAGCAGG
  R
  AAATATAACT ATATTCCTCT GTATAGCCAT AGATGATGGT TAGCTTTATT GTAGAATCGC
  CTGGGAAAGA GTCTCAAAAA ACTGTCTATA TTGTATTGGT CTATGGACAT GTTTGTGGGG
  GTTGTCTTAA GTCAGTTAGT CAACGTGGAA AAACACAGCC CACTCTGGGT GGCACCATTC
  CTTGGAAGGG ACCCTAAACT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss132961603	ENSMUSSNP4760642	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50456288					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:8104206 () rs orientation: forward

Symbol	Name	Function Class
Col28a1	collagen, type XXVIII, alpha 1	Intron
D6Mit348	DNA segment, Chr 6, Massachusetts Institute of Technology 348	901 bp proximal
Rr626348	regulatory region 626348	722 bp proximal
Rr626349	regulatory region 626349	1600 bp proximal