rs50453980 SNP Detail

Summary

• ID
  rs50453980
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:95183595 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCATGGTGGT GCACGCCTTT
  AATCCCAGTG CTTCAGAGGC AGGCAGATCT CTGACAAGGA CAGCCAGGGA CACACACACA
  CACACACACA CACACACACA CACACACACA CAGAGAGAGA GAGAGAGAGA GAGAGAGAGA
  GAGAGAGAGA GAGACCCTGT CTTGAAAAGC AACAAAACAA AAACAGCACT TGTTCTTGCA
  K
  AGGACTCTAG TTTGGTTTCC AACATCTACA GAGTGGCTCA AAACCATCCC CTAACATCTA
  TTTCAGAGGA TCTGACACCT TCTTTCTTTT GAGAGCAACA GGCATGCATG TGATGTCCGT
  ATATACAGAC AAGAAAAATA CTCATACACA TAAAAAAATA GGTCTAAAAA AATTTGGTTT
  TAGAGAAAAA GGAAGACCAT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135510437	ENSMUSSNP4431124	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50453980					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:95183595 () rs orientation: forward

Symbol	Name	Function Class
Prune1	prune exopolyphosphatase	Intron
Rr580883	regulatory region 580883	1620 bp distal
Rr580884	regulatory region 580884	673 bp proximal