rs50452554 SNP Detail

Summary

• ID
  rs50452554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:60175505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTGAGTAC CACAACCAGG
  TAGCATGGAA TGTCAGACAC ATTGGTAATT CTCTGCACTA CAGAGCTTAT TTAGTCTTTC
  TGTTATATAC AAACAAATGT CTGACACTAG ATTTATAGTG TATTTGAATC TTGAATTTGT
  TTGATTCTTT TTAAATATCC ATTTCAAGCA GGTCCATTCC CTGTAGTCAT TACAAAACTA
  Y
  TTAAATTTTC TTTGCATCTA AATAAAATCA AAGTGATCAT CTCTCCAGAA AACCAATTGT
  CAAGCTTACA ATGAAATTAA TTCTGAATTG CTATTTATCA AGTTAATTAC AAGGAACAAA
  GTCAGTGATT CCCTTACCAT CCACATAGAA GCATATAATA AGTCCATTTT TAGCATTTAT
  TTTGCTGTGT ATTTAAACAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146406650	ENSMUSSNP4926529	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs50452554					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:60175505 () rs orientation: forward

Symbol	Name	Function Class
Rr593189	regulatory region 593189	542 bp distal
Rr593190	regulatory region 593190	485 bp distal