rs50443988 SNP Detail

Summary

• ID
  rs50443988
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152050265 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCTCTTATT TCATGGGCCA
  AAAATAAAAT GGAAAAAAAA TTTCTCTTAA ATTGCTCCTG GTGATTCATG CCTTTAATCT
  CACAAGTCAG GAGGGAGAGC TCAAGGCTAG CCTGGGCTAC ATAACAAGAC CCTGACTTAA
  AAACAAAACA CAGTAGTTAC AAAGCACTGG CTGCTCTTCT AAAGGAATTG TGTTCGATTC
  Y
  TTGACCCCAT AGGTGACTCA CAACCATCAA TAACTCTAGT CTTGGGACCC AAGACCTTCT
  TCTGGCTTCC TAGGGCACCG GTTATTAAGA TTATACACAG ACATATATGT AGACAAAGCA
  CCCATACAAA TCAATCAATC AGTCAATCAA TCAATCCTCC AAAAATAAAC CCCACCTTTA
  CAGTAAAAGT GCACACTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136102566	ENSMUSSNP1996479	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
ss321028702	CHEV_3_152007592	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs50443988					SNP	C	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152050265 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13948	CpG island 13948	1522 bp proximal
Rr587533	regulatory region 587533	884 bp distal
Rr587534	regulatory region 587534	1360 bp proximal
Rr587535	regulatory region 587535	1872 bp proximal
Tssr32406	transcription start site region 32406	1837 bp upstream
Usp33	ubiquitin specific peptidase 33	1850 bp upstream