rs50442053 SNP Detail

Summary

• ID
  rs50442053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:38537498 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGACTC GTCTGGGCCA
  TTTTGCAGAC TTTCTCTTCC CAAGGATTAG TCATAATAGG TTTTGTTTGG TTTTGTATCG
  TTTAAATCTT CAGTGTGGGC TAGGATTTGG ATACATTACC ACAGGTTTCA CATCCATTTG
  GGCATAACTT ATCTGTGAGT TAACTGGGAA TGACCAGTTG CCGTGAAATT CAACAGTCTC
  R
  GAGTTCATTT GGCAGAGGAA TGTGCACGTC TTTATTTGGT TCCATAGCCT TAATTAGCAA
  AGGATGTATT TGCTTAATTG TCCAGCAGGA TGTAAAAATG GCTTGTCCGG AAGCTGGGCA
  ACACCATTCC TGTATCTTTT GGGGTCACAG AACTCTATGG CTCAATCTGG AGTTCATGTG
  ATGGTAGATG CTTCAAGTAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss134837199	ENSMUSSNP1551341	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50442053					SNP	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38537498 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ankrd50	ankyrin repeat domain 50			mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi13104	CpG island 13104			946 bp proximal
Gm65619	predicted gene, 65619			1756 bp upstream
Rr397648	regulatory region 397648			1400 bp upstream
Rr575674	regulatory region 575674			1919 bp distal
Rr575675	regulatory region 575675			876 bp proximal
Rr575676	regulatory region 575676			1485 bp proximal
Rr575677	regulatory region 575677			1767 bp proximal
Tssr28929	transcription start site region 28929			1846 bp upstream
Tssr33057	transcription start site region 33057			1430 bp downstream
Tssr33058	transcription start site region 33058			1453 bp downstream
Tssr33059	transcription start site region 33059			1482 bp downstream