rs50439543 SNP Detail

Summary

• ID
  rs50439543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:46399972 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATATTCCAGT GCCTAGTCGC
  ACAGTAAAAT CATGACATTA AACTGCCCCA CAGACCTACC AGGGTCCTGC GGCTCATTCA
  TCTCACATCC TGGATCTTTT AGCTTCTCTT CCTTTCTTTC CTGACACACC AACACCCTTT
  GTCTTCCTCT CAGCACAGTC TTGCTTTCTA TTTCAGGGGG AAAAGGAAGC CATCAAAAAC
  R
  CACTTACAAA GGTTCCCACC ACCACAGGCA CCAGCCAGCC GGTATTTCTT CGCAGACTCT
  GCCCACACCA ATCCTTCAGG CCTACCCTCC CCTTCTTTGT GTTTGGTTCA CATAGACAGA
  GGTGACCCGG TATTTCAGAA TGTTATCGAC ACGAAACATT ACAGTCTGTT GGACACACAG
  CATGATGTCA CATCATAAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss149179885	ENSMUSSNP3854958	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50439543					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:46399972 () rs orientation: forward

Symbol	Name	Function Class
Gm74180	predicted gene, 74180	within coordinates
Rr380764	regulatory region 380764	1078 bp downstream
Rr646777	regulatory region 646777	1855 bp distal
Saa2	serum amyloid A 2	1285 bp upstream
Tssr66700	transcription start site region 66700	1284 bp upstream
Tssr66701	transcription start site region 66701	1805 bp upstream