rs50439377 SNP Detail

Summary

• ID
  rs50439377
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:81667721 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGTGGC AAGGACACAG
  GGAGTTCATA ACCTGCGGGA TCAACTAAGC GGGGTCCATG GGGGTTCATA GAGACTGCTA
  TGGCTGTCAC GGAGCTGCTT TGTGCATGGA TCTGAGCTAG GCCCTCTGCA TACGTGTAAC
  GATTGGTGGC ATGGTGTCTT TTGACACGTG ACAGTGAGAG TGAGGTGTCT CTGATTCTCT
  Y
  GCCTCCTCTT GGGACTTTTT GTTCTACTAG GTTCCCTCGT TCAGCTTTGA TGTGAAGGTT
  TGTGCCTGGT CTTATTGTAT CTTAATGTGC TTTGTGGAAT CTGCCATACT GTAGATTGAC
  TCTCAATCAT CCCTAGGAGG CCTGCTCTTT TCTGGGTGTA GACAACTGGG GTGGGGAAAC
  TAAGAGAGAA GGAGGTGGGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
ss60421976	NES15919484	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	KK/HlJ	MOLF/EiJ	PWD/PhJ
rs50439377					SNP	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60421976	NES15919484	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:81667721 () rs orientation: forward

Symbol	Name	Function Class
Rr578714	regulatory region 578714	within coordinates