rs50438050 SNP Detail

Summary

• ID
  rs50438050
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:117150385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGTGA GGACCTTTAG CTGGGTGTGT
  Y
  GGGTGAGCCC ACAGGATCGC TTTCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60932510	NES16191115	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50438050					SNP	T	T	T	T	T	T	C	T	C	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60932510	NES16191115	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:117150385 () rs orientation: forward

Symbol	Name	Function Class
Cxcl12	C-X-C motif chemokine ligand 12	Intron
Rr637288	regulatory region 637288	756 bp distal
Rr637289	regulatory region 637289	442 bp proximal
Rr637290	regulatory region 637290	627 bp proximal
Rr637291	regulatory region 637291	678 bp proximal
Tssr58392	transcription start site region 58392	1937 bp downstream
Tssr58393	transcription start site region 58393	1918 bp downstream
Tssr58394	transcription start site region 58394	1878 bp downstream
Tssr58395	transcription start site region 58395	68 bp upstream
Tssr58396	transcription start site region 58396	84 bp upstream
Tssr58397	transcription start site region 58397	122 bp upstream
Tssr58398	transcription start site region 58398	148 bp upstream
Tssr58399	transcription start site region 58399	170 bp upstream
Tssr58400	transcription start site region 58400	198 bp upstream
Tssr58401	transcription start site region 58401	234 bp upstream
Tssr58402	transcription start site region 58402	265 bp upstream
Tssr58403	transcription start site region 58403	283 bp upstream
Tssr58404	transcription start site region 58404	302 bp upstream
Tssr58405	transcription start site region 58405	344 bp upstream
Tssr58406	transcription start site region 58406	374 bp upstream
Tssr58407	transcription start site region 58407	405 bp upstream
Tssr58408	transcription start site region 58408	472 bp upstream
Tssr58409	transcription start site region 58409	494 bp upstream
Tssr58410	transcription start site region 58410	516 bp upstream
Tssr58411	transcription start site region 58411	532 bp upstream
Tssr58412	transcription start site region 58412	559 bp upstream
Tssr58413	transcription start site region 58413	572 bp upstream
Tssr58414	transcription start site region 58414	605 bp upstream
Tssr58415	transcription start site region 58415	620 bp upstream
Tssr58416	transcription start site region 58416	635 bp upstream
Tssr58417	transcription start site region 58417	689 bp upstream
Tssr58418	transcription start site region 58418	722 bp upstream
Tssr58419	transcription start site region 58419	741 bp upstream
Tssr58420	transcription start site region 58420	768 bp upstream
Tssr58421	transcription start site region 58421	787 bp upstream
Tssr58422	transcription start site region 58422	813 bp upstream
Tssr58423	transcription start site region 58423	821 bp upstream
Tssr58424	transcription start site region 58424	883 bp upstream
Tssr58425	transcription start site region 58425	928 bp upstream
Tssr58426	transcription start site region 58426	950 bp upstream
Tssr58427	transcription start site region 58427	977 bp upstream
Tssr58428	transcription start site region 58428	992 bp upstream
Tssr58429	transcription start site region 58429	1057 bp upstream
Tssr58430	transcription start site region 58430	1102 bp upstream
Tssr58431	transcription start site region 58431	1198 bp upstream
Tssr58432	transcription start site region 58432	1271 bp upstream
Tssr58433	transcription start site region 58433	1307 bp upstream
Tssr58434	transcription start site region 58434	1745 bp upstream
Tssr62617	transcription start site region 62617	132 bp downstream
Tssr62618	transcription start site region 62618	154 bp downstream
Tssr62619	transcription start site region 62619	190 bp downstream
Tssr62620	transcription start site region 62620	233 bp downstream
Tssr62621	transcription start site region 62621	299 bp downstream
Tssr62622	transcription start site region 62622	851 bp downstream
Tssr62623	transcription start site region 62623	869 bp downstream
Tssr62624	transcription start site region 62624	984 bp downstream
Tssr62625	transcription start site region 62625	1135 bp downstream
Tssr62626	transcription start site region 62626	1231 bp downstream
Tssr62627	transcription start site region 62627	1262 bp downstream
Tssr62628	transcription start site region 62628	1397 bp downstream
Tssr62629	transcription start site region 62629	1577 bp downstream