rs50435400 SNP Detail

Summary

• ID
  rs50435400
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25708366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACAATGAG GTTAAAATGA
  AAAATAAAAA TTTAAAAAAA CAAGTCAATA GCAACTTGGG ATAGAATGAA CTGCATAATT
  TGTATTGTAG ATGGCTTGCT TCAGACATAA ATAAAATCTG TAAACAGATT ATCATATTGA
  AATGATAGCA TCACATGATA TGTTTCTAAC ATTTATGAAA TAATCAGGAA AGGGTTTTAC
  R
  ATTTTTAAAG AAAACAAAGG TGCAATCCAG TTGATGTTTT ACTGACACAT TGCTGTTTAG
  CTGCTCTTCA CTTAAGATCT TCAGTTAGGG AGGCAGTTTG CAAGTTAGAG AAAAGAATGG
  GAGACTGAAG AGACCTGTAT ATCAATTCTA TCACTCATGG GCTATCACAA TGTGGTACTC
  ATTTCCTGTG TGACTCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60873598	NES15975968	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50435400					SNP	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873598	NES15975968	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25708366 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	553 bp distal
Rr627305	regulatory region 627305	1057 bp proximal