rs50430623 SNP Detail

Summary

• ID
  rs50430623
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:67513071 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTATTCCCAG GTCCCGCGGA
  AGAAGCCGGC AGCCCTGAGC TGCCTGAGAT AGAATCAGGC AGGGGAGATT GCTCCTGCCA
  TCTGCTGACC AAAACCCCAT AGAGGAAACC AGTACTTACC TGGCCGCACC CCTCCTCATA
  GCTCAGAACC AGGGCGTCCC ACCTTTCCTA GTGCACCTCA GGAGTTTCTC CAGAGGCCCA
  R
  CTCCCGACTC TCACGTCCCT ACAATTCCAG ACCCCATAAT CCCGTACCTT CTTTTTCTCT
  CAACTCCTAT CTTCAGTTTC GTTCCTTCCC TCTCTTCTTG CTCCAGAACA CCTTATAACA
  CAGTTAAACA GTTCACTGAC ATAAACCTGA TCACATGCCT TTGTCTGTAA ACCCTATTCT
  AGGTGAGATG GTGCAGCTGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60894258	NES15959611	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	A		A	G	A		G
ss321812337	CHEV_6_67486081	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs50430623					SNP	G	G	G	G	G	G	G	G	A	A	A	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60894258	NES15959611	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:67513071 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17512	CpG island 17512	211 bp distal
Gm42889	predicted gene 42889	within coordinates
Rr631668	regulatory region 631668	1275 bp distal
Rr631669	regulatory region 631669	832 bp distal
Rr631670	regulatory region 631670	281 bp distal
Rr631671	regulatory region 631671	11 bp distal
Rr631672	regulatory region 631672	108 bp distal
Tacstd2	tumor-associated calcium signal transducer 2	291 bp upstream
Tssr1872	transcription start site region 1872	1306 bp upstream
Tssr61255	transcription start site region 61255	1342 bp upstream
Tssr61256	transcription start site region 61256	861 bp upstream
Tssr61257	transcription start site region 61257	390 bp upstream
Tssr61258	transcription start site region 61258	285 bp upstream
Tssr61259	transcription start site region 61259	217 bp upstream