rs50421783 SNP Detail

Summary

• ID
  rs50421783
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:116111722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCAAT ATAAAGAAGG ATACTAAGGG
  R
  CCATCTTGGA ATAGACTCCC TATTA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133574983	ENSMUSSNP1519056	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50421783					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116111722 () rs orientation: forward

Symbol	Name	Function Class
Rr637158	regulatory region 637158	1236 bp proximal
Rr637159	regulatory region 637159	1363 bp proximal
Rr637160	regulatory region 637160	1653 bp proximal
Tmcc1	transmembrane and coiled coil domains 1	Intron
Tssr62558	transcription start site region 62558	868 bp upstream
Tssr62559	transcription start site region 62559	853 bp upstream