rs50420061 SNP Detail

Summary

• ID
  rs50420061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:57880663 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAGAGG GGAGGGTCAT
  AAGCAGACAG CACACATCTT TTAAGGAGGC ACAGTGAGAC AGGAGGGTCT GCACCAAAGA
  TACCCACATG TTCTCCCAAA ACGAATTATT TCCTACTAAA TAAAATTGCT CAAATTGCTC
  TCTTGGTTCA AGTGAATGTC TTGCAGAAGT CAGCCAGGAA GTAGGCTGGG TGGTTCACAT
  Y
  GAGGCTTGTC TCTCTGCCAG CATCTCTAAA CTGAGCCCAA CTCTATTCAA TGCCAGTTGT
  ATGTCCAGCA TCTCATAGCT GAAGAAGCCA CAATAAGAGT TGTTCTAGTG TGTCTTCTGC
  TTCTGAACAA GCTTCACTCC AATGTAACCG TGGCTATTCA AAATCAGGAA TAAGATGCTC
  TGTTCAGATG AATTTCCACA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135205290	ENSMUSSNP5561138	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50420061					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:57880663 () rs orientation: forward

Symbol	Name	Function Class
Gm32753	predicted gene, 32753	within coordinates
Rr577179	regulatory region 577179	259 bp distal