rs50419589 SNP Detail

Summary

• ID
  rs50419589
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:135002318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCGCCTT GTGTAATTAG
  GGAGGGCTGG GACCTCGTGG AGCCTCTGGC GTCCTGTCCA CCCCTACAGG CAAAGCCAGC
  GCCATGTTCC ACTCAGTGGC TAGCTAGTTT GTGGTAAAGT AAGAAAAGCC AGCAGGCTGT
  CCTGTGGAGC AAAGCTTAAA CCAGAAACAA ATAGAAGGGA CAGCTGGACT CTGAACTGGG
  Y
  CCCCTGTTAA TTTTTCACAG AACTGTGAAC AGATTAAAGT CCCCTCACAG TATAGCCTTT
  CCACCGTGAT CCCAAATGGT AAATTCAAAC AGACACACAC TTAAAATGGC CCAGCAGAGC
  CTCAAAAGAC TCCACATTGG CCCCAAGACT ACTGGGTCCC AGTTAGGATT TATCCAAGTC
  ATTTTGGGTC CCCAAATTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147543355	ENSMUSSNP4557999	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50419589					SNP	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:135002318 () rs orientation: forward

Symbol	Name	Function Class
Rr398589	regulatory region 398589	1816 bp downstream
Rr601980	regulatory region 601980	1703 bp distal
Rr601981	regulatory region 601981	1878 bp distal
Rr601982	regulatory region 601982	within coordinates
Rr601983	regulatory region 601983	1807 bp proximal