rs50416256 SNP Detail

Summary

• ID
  rs50416256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116124183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCACTG TAGCAAACTC
  CCTGTACTAA ATTTCCTCTG AATGCCTAAC ATCAAGAACT CTGATGACAG ATGCTGTTGG
  AGACGTGTGG AAAGTGGAAC TTTTATTCAA TGTAGGTGGG GTGCAAGCTA GTACAGCCAT
  TGTGGAAATC CTCATGGAGA TTACTCAAAA CATTAAAAAC AAATGGACCG TAGGACTTAG
  Y
  GTACCACTCA CTATATCCAA AGGACTCCTA TCACAAAGAT ACCTACACAT CCATATTTAT
  TGCTGCCCTA TTTACAATAG AAAGGATTTA GAGCCACCCT AGATGTCCAT GAACAGAGTG
  GATAATGAAA ATGTGGAACC AATTCACAAT GGGATGTTAC TCAGCTGTAA AGAAAATGGA
  ATTTCCAGGG GGGAAAAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
ss60437501	NES15945741	PERLEGEN	MM_PANEL2	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ
rs50416256					SNP	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60437501	NES15945741	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116124183 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cdc14a	CDC14 cell division cycle 14A			Intron
				Noncoding-Transcript-Variant
Rr375619	regulatory region 375619			within coordinates
Rr397962	regulatory region 397962			1452 bp upstream
Rr583694	regulatory region 583694			648 bp distal
Rr583695	regulatory region 583695			1337 bp proximal
Rr583696	regulatory region 583696			1463 bp proximal
Rr583697	regulatory region 583697			1689 bp proximal