rs50416244 SNP Detail

Summary

• ID
  rs50416244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:25707518 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTGGTGGT TATGAGATAA
  CTCATGATAG TTACACATTT ATATATCATG TAACATTCAT TACGTTTTAA GAATGTTTAT
  GTGGACTTAT TTTCTTTGGT GGTGGCAAGT CATTAGATGT GCACCATATG AAATCCTTAC
  AAAGAAATAG TGACAAACAC AGACACCTCC AGCCAGAAGG CTCACACCAT GACTTGTACA
  Y
  ACTCTTGGAC TATTCTGTCT GGAAAACGAT TGTTAGAGAG CAGGCTGGTG CCTTTAGTCA
  AGTGGAACTT ACTAGTACTT AGTTACTATG TATCTAAAAT ACCTGCACAG GCTACTCCCA
  TGTTCTTCAA AAGAATTTCT GTTATAAAGA GTATGGAAAA GAAAAGGAAA CTGCACAATG
  CTTGAGGCGA TGATTACTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60873610	NES15976010	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50416244					SNP	T	T	T	T	T	T	T	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60873610	NES15976010	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:25707518 () rs orientation: forward

Symbol	Name	Function Class
Rr627304	regulatory region 627304	274 bp proximal
Rr627305	regulatory region 627305	1905 bp proximal