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rs50416244 SNP Detail
Summary
  • ID
    rs50416244
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr6:25707518 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TCCTGGTGGT TATGAGATAA
    CTCATGATAG TTACACATTT ATATATCATG TAACATTCAT TACGTTTTAA GAATGTTTAT
    GTGGACTTAT TTTCTTTGGT GGTGGCAAGT CATTAGATGT GCACCATATG AAATCCTTAC
    AAAGAAATAG TGACAAACAC AGACACCTCC AGCCAGAAGG CTCACACCAT GACTTGTACA
    Y
    ACTCTTGGAC TATTCTGTCT GGAAAACGAT TGTTAGAGAG CAGGCTGGTG CCTTTAGTCA
    AGTGGAACTT ACTAGTACTT AGTTACTATG TATCTAAAAT ACCTGCACAG GCTACTCCCA
    TGTTCTTCAA AAGAATTTCT GTTATAAAGA GTATGGAAAA GAAAAGGAAA CTGCACAATG
    CTTGAGGCGA TGATTACTTA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
ss60873610 NES15976010 PERLEGEN MM_PANEL2 f SNP T T T T T T T T T T T T C T
SNP Consensus Information
SNP Consensus Type
129S1/SvImJ
A/J
AKR/J
BALB/cByJ
BTBR T<+> Itpr3/J
C3H/HeJ
CAST/EiJ
DBA/2J
KK/HlJ
MOLF/EiJ
NOD/ShiLtJ
NZW/LacJ
PWD/PhJ
WSB/EiJ
rs50416244 SNP T T T T T T T T T T T T C T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss60873610 NES15976010 PERLEGEN MM_PANEL f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr6:25707518 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Rr627304 regulatory region 627304 274 bp proximal
Rr627305 regulatory region 627305 1905 bp proximal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
03/25/2025
MGI 6.24
The Jackson Laboratory