rs50406086 SNP Detail

Summary

• ID
  rs50406086
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:145190589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAATCCACT CCGGGAGATG AGAAGGCGCC GGGAGGCCTC
  TGAGAACCTT CCATTTTCCT TTCCCTTTCC CTCGGCCCTC CGCCTCCTCA GAGTCAGCCC
  K
  CCTTCCCTGA CCTCCGTGAC CCCACTGGCC CCGCCCACTC CCGTCGACGT GACTCCCGCC
  GTGAGGTAAA CGCCAGTGGA GTAGAGTTCC GCGGAAGAG                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147859526	ENSMUSSNP152113	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs50406086					SNP	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:145190589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15270	CpG island 15270	within coordinates
Gm65281	predicted gene, 65281	185 bp upstream
Rr377358	regulatory region 377358	within coordinates
Rr604377	regulatory region 604377	within coordinates
Rr604378	regulatory region 604378	196 bp proximal
Smarca5-ps	SNF2 related chromatin remodeling ATPase 5, pseudogene	279 bp upstream