rs50403818 SNP Detail

Summary

• ID
  rs50403818
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:30071493 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TGGGGTGGCT AAGCAGCCAT TGAACTCCAA GTCTGACTTT
  TTTTTTTCTT CTAACACCAA GCAAATGTAT GGGTTTGTTT TTTGTTTTTT GTTTTTTTTT
  K
  GGGGGGGGGG CATCTCATAT GCAGTCTCTC CTTCACAGAC TATCTGTGAA ATCCTGCTTC
  ATACCGTTCA TACAGTTGGG AAGCATGAAA TAATTTGAGA A                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss134728264	ENSMUSSNP420719	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs50403818					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:30071493 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mecom	MDS1 and EVI1 complex locus			Intron
				Noncoding-Transcript-Variant
Rr574704	regulatory region 574704			1624 bp distal
Rr574705	regulatory region 574705			1895 bp distal
Rr574706	regulatory region 574706			242 bp distal
Rr574707	regulatory region 574707			827 bp proximal