rs50401739 SNP Detail

Summary

• ID
  rs50401739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17061902 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCGATCCCT GGTCGGGTTT
  ACCACAGGCC AGAGCTCTAC TCCCAAGACT AGCTGGAAAG CCCAAATCAG ACTCTATGGA
  GAGAGCTGGC AGTGATAGTA ATAGGAGGGG TCCAAGAAGG GAGCATGGAT ATTTAATATT
  TTCAAAATAC ATTACATGAA CGTTTTAAAC TATTAATAAA AATATTGTTA AACAGCACTT
  R
  TTAATCTTCA GCCAGGGAGT ATTCTTTTTT TTTTAAAGAT TTATTTATTA TATATAAGTA
  CACTGTAGCT GTCTTCAGAC ACACCAGAAG AGGGCGCCAG ATCTCATTAT GGATGCTTGT
  GAGCCACCAT GTGGTTGCTG GGATTTGAAC TCAGGACCTT TGGAAGAGCA GTCTTACCCG
  CTAAGCCATC TCTCCAGCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60866961	NES15986514	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50401739					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60866961	NES15986514	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17061902 () rs orientation: forward

Symbol	Name	Function Class
Gm15473	predicted gene 15473	within coordinates
Rr626752	regulatory region 626752	1321 bp distal
Rr626753	regulatory region 626753	214 bp proximal
Rr626754	regulatory region 626754	574 bp proximal