rs50401569 SNP Detail

Summary

• ID
  rs50401569
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:119494475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATTGT AGGCACCATG TGAATGCGGA
  R
  AACCAAACCC TGAAAGTGTT CTTAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147338548	ENSMUSSNP6769558	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
ss320476619	CHEV_2_119489730	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs50401569					SNP	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:119494475 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12124	CpG island 12124	1041 bp distal
Gm75025	predicted gene, 75025	1110 bp downstream
Gm75032	predicted gene, 75032	1099 bp upstream
H3f3c	H3 histone, family 3C	1632 bp downstream
Ndufaf1	NADH:ubiquinone oxidoreductase complex assembly factor 1	1173 bp upstream
Rr397235	regulatory region 397235	1022 bp downstream
Rr563557	regulatory region 563557	1207 bp distal
Rr563558	regulatory region 563558	683 bp distal
Rr563559	regulatory region 563559	1938 bp proximal
Tssr25825	transcription start site region 25825	1159 bp upstream