rs50400795 SNP Detail

Summary

• ID
  rs50400795
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:19683086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGGCCGCGCG GAGCAGTGAC
  GTGGCGTTAT GGAGCCCTTC CGTCAACCGG CTTGCCGCTC CCTTCGATAG CTCAGCTGGT
  AGAGCGGAGG ACTGTAGGCT TGTGGCTGTG GACATCCTTA GGTCGCTGGT TCGATTCCGG
  CTCGAAGGAA AGAGCTTGCT ATTTTCTTTT ACCTTTTAAT CCTATCTATG AGGCATGTTC
  R
  GAACAAATTT CCATGCCTCG CAGTGCGCTC CTCCTCCTCT AGGGGAGCAC ATAAAGGCCA
  GATGCCGGTG GAGGGGGATT AGCTCAAATG GTAGAGCGCT CGCTTAGCAT GCGAGAGGTA
  GCGGGATCGA TGCCCGCATC CTCCAGTTCC CCTTTTTTTG TCTTTGCATT TCTGTAGTTT
  TTCTTTTCAT TGTTATATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60376864	NES15884513	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs50400795					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60376864	NES15884513	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:19683086 () rs orientation: forward

Symbol	Name	Function Class
1700064H15Rik	RIKEN cDNA 1700064H15 gene	189 bp upstream
Cpgi13003	CpG island 13003	within coordinates
Cpgi13004	CpG island 13004	928 bp proximal
n-TAagc14	nuclear encoded tRNA alanine 14 (anticodon AGC)	73 bp upstream
n-TRacg3	nuclear encoded tRNA arginine 3 (anticodon ACG)	891 bp upstream
n-TYgta1	nuclear encoded tRNA tyrosine 1 (anticodon GTA)	475 bp downstream
n-TYgta2	nuclear encoded tRNA tyrosine 2 (anticodon GTA)	52 bp downstream
Rr574008	regulatory region 574008	256 bp distal
Rr574009	regulatory region 574009	within coordinates
Rr574010	regulatory region 574010	1302 bp proximal
Tssr32702	transcription start site region 32702	237 bp upstream